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Class Summary |
| AlgebraicRule |
A rule that expresses equations with left-hand side of zero. |
| Annotations |
Stores the annotation metadata for an SBML node. |
| AssignmentRule |
A rule that expresses equations which set the value of variables. |
| Compartment |
A bounded container in which species are located. |
| Event |
An instantaneous discontinuous change in the state of the model when a criterion is met. |
| EventAssignment |
The variable assignments made when an Event is executed. |
| FunctionDefinition |
An association between an identifier and a mathematical function. |
| KineticLaw |
The mathematics of the rate of the enclosing Reaction. |
| Model |
This class defines a grouping of components - MathDefinitions,
Compartments, Species, Reactions, Parameters, Events, Rules, and UnitDefinitions. |
| ModifierSpeciesReference |
This class defines a modifier that takes part in a Reaction. |
| Notes |
Stores the note metadata for an SBML node. |
| Parameter |
This class declares a variable for use in MathML structures. |
| RateRule |
A rule that expresses equations which set the rate of change of variables. |
| Reaction |
This class represents a reaction, which is some transformation,
transport or binding process that can change the amount of one or more
Species. |
| Rule |
Rules put constraints on variables in cases for which the constraint
cannot be expressed as a reacion or initial value. |
| SBase |
The base class for the main SBML Level 2 data types. |
| SBaseId |
Name and id for an sbml node. |
| SBMLLevel2Document |
This class represents a SBML Level 2 Document This code is licensed
under the DARPA BioCOMP Open Source License. |
| SBMLLevel2Reader |
Reads a SBML Level 2 file into a Model. |
| Species |
This class represents an entity that takes part in Reactions. |
| SpeciesReference |
A class defining a reference to a Species for use in a Reaction. |
| StoichiometryMath |
This code is licensed under the DARPA BioCOMP Open Source License. |
| Unit |
Units of measurement for quantities in an SBML model. |
| UnitDefinition |
A combination of Units to create a user-defined unit of measurement. |
| UnitManager |
Manages a collection of unit definitions. |