org.jscience.ml.sbml
Class SBase

java.lang.Object
  org.jscience.ml.sbml.SBase

Direct Known Subclasses:

EventAssignment, KineticLaw, ModifierSpeciesReference, Rule, SBaseId, SpeciesReference, StoichiometryMath, Unit

public class SBase
extends java.lang.Object

The base class for the main SBML Level 2 data types. This code is licensed under the DARPA BioCOMP Open Source License. See LICENSE for more details.

Constructor Summary

protected

SBase() Creates a new instance of SBase

Method Summary

Annotations	getAnnotations() Getter for property annotations.
java.lang.String	getMetaid() Getter for property metaid.
Notes	getNotes() Getter for property notes.
java.lang.String	getRDF() Gets the RDF String for this SBase object.
protected void	printList(java.lang.StringBuffer buffer, java.util.Collection list, java.lang.String header, java.lang.String footer) DOCUMENT ME!
protected void	printShortForm(java.lang.StringBuffer buffer, java.lang.String footer) DOCUMENT ME!
void	setMetaid(java.lang.String metaid) Setter for property metaid.
void	setRDF(java.lang.String rdf) Sets the RDF String for the SBase object.
void	setRDF(java.lang.String rdf, java.lang.String metaid) DOCUMENT ME!
java.lang.String	toString() The SBML for this element.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SBase

protected SBase()

Creates a new instance of SBase

Method Detail

getAnnotations

public Annotations getAnnotations()

Getter for property annotations.

Returns:

Value of property annotations.

getMetaid

public java.lang.String getMetaid()

Getter for property metaid.

Returns:

Value of property metaid.

getNotes

public Notes getNotes()

Getter for property notes.

Returns:

Value of property notes.

getRDF

public java.lang.String getRDF()

Gets the RDF String for this SBase object.

Returns:

The RDF String.

setMetaid

public void setMetaid(java.lang.String metaid)

Setter for property metaid.

Parameters:

metaid - New value of property metaid.

setRDF

public void setRDF(java.lang.String rdf)

Sets the RDF String for the SBase object.

Parameters:

rdf - The RDF data to add.

setRDF

public void setRDF(java.lang.String rdf,
                   java.lang.String metaid)

DOCUMENT ME!

Parameters:

rdf - DOCUMENT ME!

metaid - DOCUMENT ME!

toString

public java.lang.String toString()

The SBML for this element.

Overrides:

toString in class java.lang.Object

Returns:

DOCUMENT ME!

printList

protected void printList(java.lang.StringBuffer buffer,
                         java.util.Collection list,
                         java.lang.String header,
                         java.lang.String footer)

DOCUMENT ME!

Parameters:

buffer - DOCUMENT ME!

list - DOCUMENT ME!

header - DOCUMENT ME!

footer - DOCUMENT ME!

printShortForm

protected void printShortForm(java.lang.StringBuffer buffer,
                              java.lang.String footer)

DOCUMENT ME!

Parameters:

buffer - DOCUMENT ME!

footer - DOCUMENT ME!