org.jscience.biology.taxonomy
Class EbiFormat

java.lang.Object
  org.jscience.biology.taxonomy.EbiFormat

All Implemented Interfaces:

TaxonParser

public class EbiFormat
extends java.lang.Object
implements TaxonParser

Encapsulate the 'EBI' species format used in Embl, Genbank and Swissprot files.

Field Summary

static java.lang.String

PROPERTY_NCBI_TAXON DOCUMENT ME!

Constructor Summary

EbiFormat()

Method Summary

static EbiFormat	getInstance() DOCUMENT ME!
Taxon	parse(TaxonFactory taxonFactory, java.lang.String taxonString) DOCUMENT ME!
java.lang.String	serialize(Taxon taxon) DOCUMENT ME!

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PROPERTY_NCBI_TAXON

public static final java.lang.String PROPERTY_NCBI_TAXON

DOCUMENT ME!

Constructor Detail

EbiFormat

public EbiFormat()

Method Detail

getInstance

public static final EbiFormat getInstance()

DOCUMENT ME!

Returns:

DOCUMENT ME!

parse

public Taxon parse(TaxonFactory taxonFactory,
                   java.lang.String taxonString)
            throws CircularReferenceException

DOCUMENT ME!

Specified by:

parse in interface TaxonParser

Parameters:

taxonFactory - DOCUMENT ME!

taxonString - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

CircularReferenceException - DOCUMENT ME!

java.lang.IllegalArgumentException - DOCUMENT ME!

serialize

public java.lang.String serialize(Taxon taxon)

DOCUMENT ME!

Specified by:

serialize in interface TaxonParser

Parameters:

taxon - DOCUMENT ME!

Returns:

DOCUMENT ME!