Hierarchy For Package org.jscience.biology.alignment

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • org.jscience.biology.alignment.AlignmentBlock
    • org.jscience.biology.alignment.LocalAlignmentBlock
  • org.jscience.biology.alignment.CharSequence
  • org.jscience.biology.alignment.Factor
  • org.jscience.biology.alignment.FactorSequence
  • org.jscience.biology.alignment.OutMatrix (implements org.jscience.biology.alignment.Matrix)
  • org.jscience.biology.alignment.PairwiseAlignment (implements java.io.Serializable)
  • org.jscience.biology.alignment.PairwiseAlignmentAlgorithm
    • org.jscience.biology.alignment.CrochemoreLandauZivUkelson
      • org.jscience.biology.alignment.CrochemoreLandauZivUkelsonGlobalAlignment
      • org.jscience.biology.alignment.CrochemoreLandauZivUkelsonLocalAlignment
    • org.jscience.biology.alignment.NeedlemanWunsch
    • org.jscience.biology.alignment.SmithWaterman
  • org.jscience.biology.alignment.ScoringScheme
    • org.jscience.biology.alignment.BasicScoringScheme
    • org.jscience.biology.alignment.ScoringMatrix
  • org.jscience.biology.alignment.Smawk
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.jscience.biology.alignment.IncompatibleScoringSchemeException
      • org.jscience.biology.alignment.InvalidScoringMatrixException
      • org.jscience.biology.alignment.InvalidSequenceException
  • org.jscience.biology.alignment.Trie

Interface Hierarchy

• org.jscience.biology.alignment.Matrix