org.jscience.biology
Class Individual

java.lang.Object
  org.jscience.biology.Individual

All Implemented Interfaces:

java.lang.Cloneable, Positioned

Direct Known Subclasses:

HistoricalIndividual

public class Individual
extends java.lang.Object
implements java.lang.Cloneable, Positioned

A class representing an individual from a specie. Could also be called organism.

Constructor Summary

Individual(Species species)
Creates a new Individual object.

Method Summary

void	addBehavior(Behavior behavior) DOCUMENT ME!
void	addRole(Role role) DOCUMENT ME!
boolean	checkGenome() DOCUMENT ME!
java.lang.Object	clone() DOCUMENT ME!
boolean	equals(java.lang.Object o) DOCUMENT ME!
java.util.Set	getAllCells() DOCUMENT ME!
java.lang.Object	getAttribute() DOCUMENT ME!
java.util.Set	getBehaviors() DOCUMENT ME!
java.util.Set	getOrgans() DOCUMENT ME!
Place	getPosition() DOCUMENT ME!
java.util.Set	getRoles() DOCUMENT ME!
int	getSex() DOCUMENT ME!
Species	getSpecies() DOCUMENT ME!
int	getStage() DOCUMENT ME!
Place	getTerritory() DOCUMENT ME!
java.util.Set	getTissues() DOCUMENT ME!
void	removeBehavior(Behavior behavior) DOCUMENT ME!
void	removeRole(Role role) DOCUMENT ME!
java.util.Set	reproduce(java.util.Set individuals) DOCUMENT ME!
void	setAttribute(java.lang.Object attribute) DOCUMENT ME!
void	setBehaviors(java.util.Set behaviors) DOCUMENT ME!
void	setOrgans(java.util.Set organs) DOCUMENT ME!
void	setPosition(Place place) DOCUMENT ME!
void	setRoles(java.util.Set roles) DOCUMENT ME!
void	setSex(int sex) DOCUMENT ME!
void	setSpecies(Species species) DOCUMENT ME!
void	setStage(int stage) DOCUMENT ME!
void	setTerritory(Place territory) DOCUMENT ME!
void	setTissues(java.util.Set tissues) DOCUMENT ME!

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Individual

public Individual(Species species)

Creates a new Individual object.

Parameters:

species - DOCUMENT ME!

Throws:

java.lang.IllegalArgumentException - DOCUMENT ME!

Method Detail

getSpecies

public Species getSpecies()

DOCUMENT ME!

Returns:

DOCUMENT ME!

setSpecies

public void setSpecies(Species species)

DOCUMENT ME!

Parameters:

species - DOCUMENT ME!

Throws:

java.lang.IllegalArgumentException - DOCUMENT ME!

getStage

public int getStage()

DOCUMENT ME!

Returns:

DOCUMENT ME!

setStage

public void setStage(int stage)

DOCUMENT ME!

Parameters:

stage - DOCUMENT ME!

getSex

public int getSex()

DOCUMENT ME!

Returns:

DOCUMENT ME!

setSex

public void setSex(int sex)

DOCUMENT ME!

Parameters:

sex - DOCUMENT ME!

getOrgans

public java.util.Set getOrgans()

DOCUMENT ME!

Returns:

DOCUMENT ME!

setOrgans

public void setOrgans(java.util.Set organs)

DOCUMENT ME!

Parameters:

organs - DOCUMENT ME!

getTissues

public java.util.Set getTissues()

DOCUMENT ME!

Returns:

DOCUMENT ME!

setTissues

public void setTissues(java.util.Set tissues)

DOCUMENT ME!

Parameters:

tissues - DOCUMENT ME!

getAllCells

public java.util.Set getAllCells()

DOCUMENT ME!

Returns:

DOCUMENT ME!

checkGenome

public boolean checkGenome()

DOCUMENT ME!

Returns:

DOCUMENT ME!

reproduce

public java.util.Set reproduce(java.util.Set individuals)

DOCUMENT ME!

Parameters:

individuals - DOCUMENT ME!

Returns:

DOCUMENT ME!

clone

public java.lang.Object clone()

DOCUMENT ME!

Overrides:

clone in class java.lang.Object

Returns:

DOCUMENT ME!

equals

public boolean equals(java.lang.Object o)

DOCUMENT ME!

Overrides:

equals in class java.lang.Object

Parameters:

o - DOCUMENT ME!

Returns:

DOCUMENT ME!

getPosition

public Place getPosition()

DOCUMENT ME!

Specified by:

getPosition in interface Positioned

Returns:

DOCUMENT ME!

setPosition

public void setPosition(Place place)

DOCUMENT ME!

Parameters:

place - DOCUMENT ME!

Throws:

java.lang.IllegalArgumentException - DOCUMENT ME!

getTerritory

public Place getTerritory()

DOCUMENT ME!

Returns:

DOCUMENT ME!

setTerritory

public void setTerritory(Place territory)

DOCUMENT ME!

Parameters:

territory - DOCUMENT ME!

Throws:

java.lang.IllegalArgumentException - DOCUMENT ME!

getBehaviors

public java.util.Set getBehaviors()

DOCUMENT ME!

Returns:

DOCUMENT ME!

setBehaviors

public void setBehaviors(java.util.Set behaviors)

DOCUMENT ME!

Parameters:

behaviors - DOCUMENT ME!

Throws:

java.lang.IllegalArgumentException - DOCUMENT ME!

addBehavior

public void addBehavior(Behavior behavior)

DOCUMENT ME!

Parameters:

behavior - DOCUMENT ME!

removeBehavior

public void removeBehavior(Behavior behavior)

DOCUMENT ME!

Parameters:

behavior - DOCUMENT ME!

addRole

public void addRole(Role role)

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Parameters:

role - DOCUMENT ME!

removeRole

public void removeRole(Role role)

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Parameters:

role - DOCUMENT ME!

setRoles

public void setRoles(java.util.Set roles)

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Parameters:

roles - DOCUMENT ME!

getRoles

public java.util.Set getRoles()

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Returns:

DOCUMENT ME!

getAttribute

public java.lang.Object getAttribute()

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Returns:

DOCUMENT ME!

setAttribute

public void setAttribute(java.lang.Object attribute)

DOCUMENT ME!

Parameters:

attribute - DOCUMENT ME!